I've had a problem with an unknown parasite in my 45g tank for several months now. I will treat the fish, they get better for a few weeks, an then they start flashing on the plants again. I figured that the parasite was living deep in the gravel and was thus unaffected by the medication, and so to avoid further disturbance of my plants I removed all fish and placed them into two bare-bottom tanks for treatment, thinking that giving the 45g two weeks or so without any fish would allow the parasite to die out without a host.
I'm about 10 days into this experiment, and when I looked into the 45 today I saw over a dozen danio fry that appear to have just hatched. I realize that it is hard to tell without knowing what exactly is affecting the fish (they show no signs of the more typical ailments such as ich, velvet, anchor worm, or lice), but I'm wondering what the chances are that they have ruined my plan to starve the parasites, and if anyone has any suggestions as to what to do next.
For reference, I had 8 zebra danios, 4 angelfish, 2 pearl gouramis, 7 Amano shrimp, and 3 ottocinclus in the tank. The parasite seems to be relatively non-lethal, as I've only lost 2 danios and 2 ottos to it, and I'm usually not terribly quick about taking action when I see symptoms. Really the only symptom is the flashing, which I usually notice first in the gouramis or danios, and has yet to spread to the angels (knock on wood). The tank stays relatively warm (around 80) since I don't have control over my room temperature and the heat tends to be on full blast all winter.
Thanks for any advice,
-Josh